Schedule > Detailed program
| Metropole |
Day 1 - Tuesday june 27 th |
Pointe-à-Pitre |
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Registration & Connexion tests |
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| 13:30 |
14:00 |
Welcome and opening remarks |
07:30 |
08:00 |
| 14:00 |
15:00 |
Keynote : Allison Ballandras Colas (Nice), Chairman : Edoardo Sarti |
08:00 |
09:00 |
| Catalytic integration, the point of no return during retroviral infectionection |
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| 15:00 |
15:20 |
Institut Français de Bioinformatique (IFB) meeting,
Gildas Le Corguillé, Jacques van Helden et Guy Perrière (Plouzané)
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09:00 |
09:20 |
| 15:20 |
15:50 |
Coffe Break |
09:20 |
09:50 |
| 15:50 |
17:30 |
Parallel Session 1 Chairwoman : Thérèse Malliavin
Structural bioinformatics & proteomics / Systems biology & metabolomics
- The Martini Database (MAD): a web service to facilitate molecular simulations. Romuald Marin (Plouzané)
- On the predictibility of A-minor motifs from their local contexts. Coline Gianfrotta (Remote)
- An Agent-Based Model of Monocyte Differentiation into Tumor-Associated Macrophages in Chronic Lymphocytic Leukemia. Nina Verstraete (Remote)
- Multi-omics characterization of Richter syndrome unlocks classifiers and predictors of outcome into broader and heterogeneous lymphoma datasets. Sébastien Hergalant (Remote)
- An agnostic analysis of the human AlphaFold2 proteome using local protein conformations. Alexandre De Brevern (Remote) |
Parallel Session 2 Chairwoman : Séverine Ferdinand
Evolution, phylogeny, comp. genomics / Metagenomics & microbial ecosystems
- Horizontal transfer shapes the subsequent emergence of antibiotic resistance by point mutations. Charles Coluzzi (Nancy)
- Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island. Sebastien Breurec (Pointe-à-Pitre)
- Metagenome reveals caprine abomasal microbiota diversity at early and late stages of Haemonchus contortus infection. Laura Montou (Pointe-à-Pitre)
- KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe. David Couvin (Pointe-à-Pitre)
- SeBiMER: the bioinformatics platform of Ifremer. Patrick Durand (Plouzané) |
09:50 |
11:30 |
| 17:30 |
17:50 |
Association des Jeunes BioInformaticiens de France (JEBIF) meeting, Sébastien Graditet (Remote) |
11:30 |
11:50 |
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| Metropole |
Day 2 - Wednesday june 28 th |
Pointe-à-Pitre |
| 10:00 |
12:00 |
Site dependant activity |
04:00 |
06:00 |
| 12:00 |
13:30 |
Breakfast/Lunch |
06:00 |
07:30 |
| 13:30 |
14:30 |
Keynote : Carl Herrmann Chairwoman: Marie-Dominique Devignes |
07:30 |
08:30 |
| Explainable machine-learning models for omics: from black to grey boxes |
| 14:30 |
14:50 |
GDR BIM meeting, Hélèe Touzet (remote) |
08:30 |
08:50 |
| 14:50 |
15:10 |
Flash talk posters |
08:50 |
09:10 |
| 15:10 |
16:10 |
Posters (on gathertown) and coffee (for real) :
The best way to visit other JOBIM sites! |
09:10 |
10:10 |
| 16:10 |
17:50 |
Parallel session 3 chairwoman : Sophie schbath
Statistics, machine learning, AI and image analysis
- DeCovarT: Robust deconvolution of cell mixture in transcriptomic samples by leveraging cross-talk between genes. Bastien Chassagnol (Remote)
- Assessing goats' fecal avoidance using image analysis based monitoring. Mathieu Bonneau (Pointe-à-Pitre)
- Multivariate Analysis of RNA Chemistry Marks Uncovers Epitranscriptomics-Based Biomarker Signature for Adult Diffuse Glioma Diagnostics. Eric Rivals (Nice)
- LEAF: a machine learning approach to predict effector proteins in Candidatus Phytoplasma. Giulia Calia (Nice)
- Goodness of Fit for Bayesian Generative Models with Applications in Population Genetics. Guillaume Le Mailloux (Nice) |
Parallel session 4 chairman : Jacques Van Helden
Functional and integrative genomics
- Alteration of ribosome function upon 5-fluorouracil treatment favors cancer cell drug-tolerance. Julie Ripoll (Nice)
- Comparative analysis of whole blood transcriptomics between European and local Caribbean pigs in response to feed restriction in a tropical climate. Nausicaa Poullet (Pointe-à-Pitre)
- Drug effects in gene regulation: how multi-omics integration can benefit gene therapy design. Emeline Cherchame (Nancy)
- AnnotSV and knotAnnotSV: a webserver for human structural variations annotations and analysis. Véronique Geoffroy (Plouzané)
- Cirscan: a shiny application to decipher circRNA-miRNA-mRNA networks and condition-specific sponge mechanisms. Rose-Marie Fraboulet (Remote) |
10:10 |
11:50 |
| from 17:50 |
Site dependant activity |
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from 11:50 |
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| Metropole |
Day 3 - Thursday june 29 th |
Pointe-à-Pitre |
| 10:00 |
12:00 |
Site dependant activity |
04:00 |
06:00 |
| 12:00 |
13:30 |
Breakfast/Lunch |
06:00 |
07:30 |
| 13:30 |
14:30 |
Keynote : Anaïs Baudot Chairwoman: Sarah Djébali |
07:30 |
08:30 |
| Network-based data integration for genetic diseases |
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| 14:30 |
14:50 |
Flash talk posters |
08:30 |
08:50 |
| 14:50 |
15:50 |
Posters (on gathertown) and coffee (for real) :
The best way to visit other JOBIM sites! |
08:50 |
09:50 |
| 15:50 |
18:10 |
Mini symposium
"Metagenomics analyses in an island context (Guadeloupe) and in French Guiana"
Organizers : Isaure Quetel & David Couvin (Pointe-à-Pitre) |
Mini symposium
"Multi-omics integration: challenges and perspectives"
Organizers : Silvia Bottini, Christophe Bécavin, Anais Baudot, Laura Cantini, Vincent Guillemot (Nice) |
09:50 |
12:10 |
| From 18:00 |
Site dependant activity |
From 12:00 |
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| Metropole |
Day 4 - Friday june 30th |
Pointe à Pitre |
| 12:00 |
13:30 |
Breakfast/Lunch |
06:00 |
07:30 |
| 13:30 |
14:10 |
Parallel Session 5 Chairman : Patrick Durand
Algorithms & data structures for sequences / Knowledge representation, databases & visualization
- HairSplitter: separating strains in metagenome assemblies with long reads. Roland Faure (Plouzané)
- Opening the Black Box of Imputation Software to Study the Impact of Reference Panel Composition on Performance. Anthony Herzig (Plouzané) |
Parallel Session 6 Chairman : Gildas Le Corguillé
Workflows, reproducibility & open science
- SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes. Vincent Hervé (Nancy)
- BEAURIS: an automated, modular, and FAIR system for large-scale genome data management. Matéo Boudet (Plouzané) |
07:30 |
08:10 |
| 14:30 |
14:50 |
SFBI general meeting (Nice) |
08:30 |
08:50 |
| 14:50 |
15:10 |
Pause café |
08:50 |
09:10 |
| 15:10 |
16:10 |
Keynote : Rayan Chikhi Chairwoman: Raluca Uricaru |
15:10 |
16:10 |
| Living in the Future of Sequence Bioinformatics |
| 16:10 |
16:30 |
JOBIM24, SFBI awards & closing remarks |
16:10 |
16:30 |
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